Bacteria Can Have a ‘Sense of Smell’

Science (Aug. 17, 2010) — Bacteria are well-known to be the cause of some of the most repugnant smells on earth, but now scientists have revealed this lowest of life forms actually has a sense of smell of its own.


A team of marine microbiologists at Newcastle University have discovered for the first time that bacteria have a molecular “nose” that is able to detect airborne, smell-producing chemicals such as ammonia.

Published in Biotechnology Journal, their study shows how bacteria are capable of ‘olfaction’ — sensing volatile chemicals in the air such as ammonia produced by rival bacteria present in the environment.

Led by Dr Reindert Nijland, the research also shows that bacteria respond to this smell by producing a biofilm — or ’slime’ — the individual bacteria joining together to colonise an area in a bid to push out any potential competitor.

Biofilm is a major cause of infection on medical implants such as heart valves, artificial hips and even breast implants. Also known as ‘biofouling’ it costs the marine industry millions every year, slowing ships down and wasting precious fuel. But it also has its advantages. Certain biofilms thrive on petroleum oil and can be used to clean up an oil spill.

Dr Nijland, who carried out the work at Newcastle University’s Dove Marine Laboratory, said the findings would help to further our understanding of how biofilms are formed and how we might be able to manipulate them to our advantage.

“This is the first evidence of a bacterial ‘nose’ capable of detecting potential competitors,” he said.

“Slime is important in medical and industrial settings and the fact that the cells formed slime on exposure to ammonia has important implications for understanding how biofilms are formed and how we might be able to use this to our advantage.

“The next step will be to identify the nose or sensor that actually does the smelling.”

This latest discovery shows that bacteria are capable of at least four of the five senses; a responsiveness to light — sight — contact-dependent gene expression — touch — and a response to chemicals and toxins in their environment either through direct contact — taste — or through the air — smell.

Ammonia is one of the simplest sources of nitrogen — a key nutrient for bacterial growth. Using rival bacteria Bacillus subtilis and B.licheniformus, both commonly found in the soil, the team found that each produced a biofilm in response to airborne ammonia and that the response decreased as the distance between the two bacterial colonies increased.

Project supervisor Professor Grant Burgess, director of the Dove Marine Laboratory, said that understanding the triggers that prompt this sort of response had huge potential.

“The sense of smell has been observed in many creatures, even yeasts and slime moulds, but our work shows for the first time that a sense of smell even exists in lowly bacteria.

“From an evolutionary perspective, we believe this may be the first example of how living creatures first learned to smell other living creatures.

“It is an early observation and much work is still to be done but, nevertheless, this is an important breakthrough which also shows how complex bacteria are and how they use a growing number of ways to communicate with each other.

“Bacterial infections kill millions of people every year and discovering how your bacterial enemies communicate with each other is an important step in winning this war. This research provides clues to so far unknown ways of bacterial communication.”

Sourced & published by Henry Sapiecha

Plastic Antibody Works in First Tests

in Living Animals

Science (June 11, 2010) — Scientists are reporting the first evidence that a plastic antibody — an artificial version of the proteins produced by the body’s immune system to recognize and fight infections and foreign substances — works in the bloodstream of a living animal.


The discovery, they suggest in a report in the Journal of the American Chemical Society, is an advance toward medical use of simple plastic particles custom tailored to fight an array of troublesome “antigens.”

Those antigens include everything from disease-causing viruses and bacteria to the troublesome proteins that cause allergic reactions to plant pollen, house dust, certain foods, poison ivy, bee stings and other substances.

In the report, Kenneth Shea, Yu Hosino, and colleagues refer to previous research in which they developed a method for making plastic nanoparticles, barely 1/50,000th the width of a human hair, that mimic natural antibodies in their ability to latch onto an antigen. That antigen was melittin, the main toxin in bee venom. They make the antibody with molecular imprinting, a process similar to leaving a footprint in wet concrete. The scientists mixed melittin with small molecules called monomers, and then started a chemical reaction that links those building blocks into long chains, and makes them solidify. When the plastic dots hardened, the researchers leached the poison out. That left the nanoparticles with tiny toxin-shaped craters.

Their new research, together with Naoto Oku’s group of the University Shizuoka Japan, established that the plastic melittin antibodies worked like natural antibodies. The scientists gave lab mice lethal injections of melittin, which breaks open and kills cells. Animals that then immediately received an injection of the melittin-targeting plastic antibody showed a significantly higher survival rate than those that did not receive the nanoparticles. Such nanoparticles could be fabricated for a variety of targets, Shea says. “This opens the door to serious consideration for these nanoparticles in all applications where antibodies are used,” he adds.

Sourced and published by Henry Sapiecha 12th June 2010

Microbes galore in seas; “spaghetti” mats Pacific

HUGE MATS OF TOXIC BACTERIA ON SEA BEDS


By Alister Doyle, Environment CorrespondentPosted 2010/04/18 at 1:09 pm EDT

OSLO, Apr. 18, 2010 (Reuters) — The ocean depths are home to myriad species of microbes, mostly hard to see but including spaghetti-like bacteria that form whitish mats the size of Greece on the floor of the Pacific, scientists said on Sunday.


The survey, part of a 10-year Census of Marine Life, turned up hosts of unknown microbes, tiny zooplankton, crustaceans, worms, burrowers and larvae, some of them looking like extras in a science fiction movie and underpinning all life in the seas.

“In no other realm of ocean life has the magnitude of Census discovery been as extensive as in the world of microbes,” said Mitch Sogin of the Marine Biological Laboratory in Woods Hole, Massachusetts, head of the marine microbe census.

The census estimated there were a mind-boggling “nonillion” — or 1,000,000,000,000,000,000,000,000,000,000 (30 zeroes) — individual microbial cells in the oceans, weighing as much as 240 billion African elephants, the biggest land animal.

Getting a better idea of microbes, the “hidden majority” making up 50 to 90 percent of biomass in the seas, will give a benchmark for understanding future shifts in the oceans, perhaps linked to climate change or pollution.

Among the biggest masses of life on the planet are carpets on the seabed formed by giant multi-cellular bacteria that look like thin strands of spaghetti. They feed on hydrogen sulphide in oxygen-starved waters in a band off Peru and Chile.

“Fishermen sometimes can’t lift nets from the bottom because they have more bacteria than shrimp,” Victor Gallardo, vice chair of the Census Scientific Steering Committee, told Reuters. “We’ve measured them up to a kilo (2.2 lbs) per square meter.”

GHOSTLY MATS

The census said they carpeted an area the size of Greece — about 130,000 sq km (50,000 sq miles) or the size of the U.S. state of Alabama. Toxic to humans, the bacteria are food for shrimp or worms and so underpin rich Pacific fish stocks.

The bacteria had also been found in oxygen-poor waters off Panama, Ecuador, Namibia and Mexico as well as in “dead zones” under some salmon farms. They were similar to ecosystems on earth that thrived from 2.5 billion to 650 million years ago.

Overall in the oceans, up to a billion microbe species may await identification under the Census, an international 10-year project due for completion in October 2010.

Tiny life was found everywhere, including at thermal vents with temperatures at 150 Celsius (300F) or in rocks 1,626 meters (5,335 ft) below the sea floor. Many creatures lack names or are hard to pronounce like loriciferans, polychaetes or copepods.

One major finding was that rare microbes are often found in samples where they can be outnumbered 10,000 to one by more common species. Isolated microbes may be lying in wait for a change in conditions that could bring a population boom.

Ann Bucklin, head of the Census of Marine Zooplankton that include tiny transparent crustaceans or jellyfish, said the seas were barely studied even by the census.

“Seventy percent of the oceans are deeper than 1,000 meters,” Bucklin, of the University of Connecticut, told Reuters. “The deep layer is the source of the hidden diversity.”

Paul Snelgrove, of Memorial University in Canada, said one sample in the South Atlantic in an area the size of a small bathroom — 5.4 square meters — turned up 700 species of copepod, a type of crustacean, 99 percent of them unfamiliar.

Just finding Latin names for each find will be hard. Scientists had rejected the idea of raising funds by letting people pay to have a marine “bug” named after them.

Sourced and published by Henry Sapiecha 21st April 2010